IDconverter and IDClight: Conversion and annotation of gene and protein IDs

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dc.contributor.author Alibés, Andreu
dc.contributor.author Yankilevich, Patricio
dc.contributor.author Cañada, Andrés
dc.contributor.author Díaz-Uriarte, Ramón
dc.contributor.other UAM. Departamento de Bioquímica es_ES
dc.date.accessioned 2016-02-25T12:20:55Z
dc.date.available 2016-02-25T12:20:55Z
dc.date.issued 2007-02-13
dc.identifier.citation BMC Bioinformatics 8 (2007): 9 en_US
dc.identifier.issn 1471-2105 es_ES
dc.identifier.uri http://hdl.handle.net/10486/669938
dc.description.abstract Background: Researchers involved in the annotation of large numbers of gene, clone or protein identifiers are usually required to perform a one-by-one conversion for each identifier. When the field of research is one such as microarray experiments, this number may be around 30,000. Results: To help researchers map accession numbers and identifiers among clones, genes, proteins and chromosomal positions, we have designed and developed IDconverter and IDClight. They are two user-friendly, freely available web server applications that also provide additional functional information by mapping the identifiers on to pathways, Gene Ontology terms, and literature references. Both tools are high-throughput oriented and include identifiers for the most common genomic databases. These tools have been compared to other similar tools, showing that they are among the fastest and the most up-to-date. Conclusion: These tools provide a fast and intuitive way of enriching the information coming out of high-throughput experiments like microarrays. They can be valuable both to wet-lab researchers and to bioinformaticians en_US
dc.description.sponsorship Funding has been provided by Fundación de Investigatión Médica Mutua Madrileña and Project TIC2003-09331-C02-02 of the Spanish Ministry of Education and Science (MEC). RD-U is partially supported by the Ramón y Cajal programme of the Spanish MEC en_US
dc.format.extent 9 pag. es_ES
dc.format.mimetype application/pdf en
dc.language.iso eng en
dc.publisher BioMed Central es_ES
dc.relation.ispartof BMC Bioinformatics en_US
dc.rights © 2007 Alibés et al; licensee BioMed Central Ltd. es_ES
dc.subject.other Amino Acid Sequence en_US
dc.subject.other Database Management Systems en_US
dc.subject.other Molecular Sequence Data en_US
dc.subject.other Oligonucleotide Array Sequence Analysis en_US
dc.subject.other Proteins en_US
dc.title IDconverter and IDClight: Conversion and annotation of gene and protein IDs es_ES
dc.type article en
dc.subject.eciencia Biología y Biomedicina / Biología es_ES
dc.relation.publisherversion http://www.biomedcentral.com/1471-2105/8/9 es_ES
dc.identifier.doi 10.1186/1471-2105-8-9 es_ES
dc.identifier.publicationfirstpage 9-1 es_ES
dc.identifier.publicationlastpage 9-9 es_ES
dc.identifier.publicationvolume 8 es_ES
dc.relation.projectID Gobierno de España. TIC2003-09331-C02-02 es_ES
dc.type.version info:eu-repo/semantics/publishedVersion en
dc.rights.cc Reconocimiento es_ES
dc.rights.accessRights openAccess en


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